IL_7RQE_362

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

7RQE|1|2A|U|1083, 7RQE|1|2A|A|1088, 7RQE|1|2A|C|1092, 7RQE|1|2A|A|1095, 7RQE|1|2A|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQE|1|2A|G|1055
7RQE|1|2A|G|1056
7RQE|1|2A|A|1057
*
7RQE|1|2A|U|1081
7RQE|1|2A|U|1082
7RQE|1|2A|U|1083
7RQE|1|2A|A|1084
7RQE|1|2A|A|1085
7RQE|1|2A|A|1086
7RQE|1|2A|G|1087
7RQE|1|2A|A|1088
7RQE|1|2A|G|1089
7RQE|1|2A|U|1090
7RQE|1|2A|G|1091
7RQE|1|2A|C|1092
7RQE|1|2A|G|1093
7RQE|1|2A|U|1094
7RQE|1|2A|A|1095
7RQE|1|2A|A|1096
7RQE|1|2A|U|1097
7RQE|1|2A|A|1098
7RQE|1|2A|G|1099
7RQE|1|2A|C|1100
7RQE|1|2A|U|1101
7RQE|1|2A|C|1102
7RQE|1|2A|A|1103
7RQE|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16