IL_7RR5_007

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

7RR5|1|C1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1188

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7RR5|1|C1|A|123
7RR5|1|C1|U|124
*
7RR5|1|C1|A|144
7RR5|1|C1|G|145
7RR5|1|C1|U|146
7RR5|1|C1|U|147
7RR5|1|C1|G|148
7RR5|1|C1|U|149

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A