3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
7RR5|1|C1|A|519, 7RR5|1|C1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.1049
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

7RR5|1|C1|G|517
7RR5|1|C1|G|518
7RR5|1|C1|A|519
7RR5|1|C1|U|520
7RR5|1|C1|A|521
7RR5|1|C1|A|522
7RR5|1|C1|A|523
7RR5|1|C1|U|524
7RR5|1|C1|C|525
*
7RR5|1|C1|G|567
7RR5|1|C1|G|568
7RR5|1|C1|A|569
7RR5|1|C1|A|570
7RR5|1|C1|U|571
7RR5|1|C1|A|572
7RR5|1|C1|C|573

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LC
RPL4A isoform 1
Chain LF
60S ribosomal protein L7-A
Chain LM
60S ribosomal protein L14-A
Chain LS
60S ribosomal protein L20-A

Coloring options:


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