IL_7RR5_026

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_026 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1469

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|C|758
7RR5|1|C1|U|759
7RR5|1|C1|G|760
7RR5|1|C1|A|761
7RR5|1|C1|U|762
7RR5|1|C1|G|763
*
7RR5|1|C1|C|768
7RR5|1|C1|G|769
7RR5|1|C1|G|770
7RR5|1|C1|A|771
7RR5|1|C1|U|772
7RR5|1|C1|G|773

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28

Chain Lo

60S ribosomal protein L42-A