IL_7RR5_046

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_046 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.0864

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7RR5|1|C1|A|1120
7RR5|1|C1|U|1121
7RR5|1|C1|U|1122
*
7RR5|1|C1|A|1136
7RR5|1|C1|C|1137
7RR5|1|C1|U|1138

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7-A

Chain Lb

RPL29 isoform 1