3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
7RR5|1|C1|A|1263
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_055 not in the Motif Atlas
Homologous match to IL_8C3A_059
Geometric discrepancy: 0.2107
The information below is about IL_8C3A_059
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7RR5|1|C1|G|1262
7RR5|1|C1|A|1263
7RR5|1|C1|G|1264
7RR5|1|C1|U|1265
7RR5|1|C1|G|1266
*
7RR5|1|C1|C|1275
7RR5|1|C1|U|1276
7RR5|1|C1|C|1277

Current chains

Chain C1
25S rRNA

Nearby chains

Chain P0
RPP0 isoform 1
Chain P2
RPL12A isoform 1

Coloring options:


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