IL_7RR5_055

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7RR5|1|C1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_055 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2107

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7RR5|1|C1|G|1262
7RR5|1|C1|A|1263
7RR5|1|C1|G|1264
7RR5|1|C1|U|1265
7RR5|1|C1|G|1266
*
7RR5|1|C1|C|1275
7RR5|1|C1|U|1276
7RR5|1|C1|C|1277

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P0

RPP0 isoform 1

Chain P2

RPL12A isoform 1