IL_7RR5_085

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_085 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.3554

The information below is about IL_8C3A_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67809.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

7RR5|1|C1|C|2204
7RR5|1|C1|U|2205
7RR5|1|C1|G|2206
*
7RR5|1|C1|C|2237
7RR5|1|C1|G|2238

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-B

Chain SB

RPS1A isoform 1