3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GUCC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_102 not in the Motif Atlas
Homologous match to IL_8C3A_110
Geometric discrepancy: 0.1241
The information below is about IL_8C3A_110
Detailed Annotation
Single stack bend with bulge
Broad Annotation
Single stack bend with bulge
Motif group
IL_39137.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

7RR5|1|C1|G|2770
7RR5|1|C1|U|2771
7RR5|1|C1|C|2772
7RR5|1|C1|C|2773
*
7RR5|1|C1|G|2787
7RR5|1|C1|C|2788

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18-B
Chain La
60S ribosomal protein L28
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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