3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
7RR5|1|C1|A|3178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_124 not in the Motif Atlas
Geometric match to IL_5TBW_123
Geometric discrepancy: 0.1444
The information below is about IL_5TBW_123
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7RR5|1|C1|G|3177
7RR5|1|C1|A|3178
7RR5|1|C1|U|3179
*
7RR5|1|C1|A|3210
7RR5|1|C1|C|3211

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain LM
60S ribosomal protein L14-A
Chain LO
60S ribosomal protein L16-A
Chain LS
60S ribosomal protein L20-A
Chain Lf
60S ribosomal protein L33-A

Coloring options:


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