IL_7RR5_147

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_147 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1273

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7RR5|1|C2|U|117
7RR5|1|C2|U|118
7RR5|1|C2|A|119
7RR5|1|C2|U|120
7RR5|1|C2|U|121
7RR5|1|C2|U|122
*
7RR5|1|C2|A|295
7RR5|1|C2|U|296
7RR5|1|C2|U|297
7RR5|1|C2|C|298
7RR5|1|C2|A|299

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

RPS8A isoform 1