3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UUA*UA
Length
5 nucleotides
Bulged bases
7RR5|1|C2|U|440
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_161 not in the Motif Atlas
Geometric match to IL_4V88_407
Geometric discrepancy: 0.1348
The information below is about IL_4V88_407
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7RR5|1|C2|U|439
7RR5|1|C2|U|440
7RR5|1|C2|A|441
*
7RR5|1|C2|U|463
7RR5|1|C2|A|464

Current chains

Chain C2
18S rRNA

Nearby chains

Chain R
Ribosome-interacting GTPase 1
Chain SE
40S ribosomal protein S4
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24
Chain T
Translation machinery-associated protein 46

Coloring options:


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