IL_7RR5_168

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7RR5|1|C2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_168 not in the Motif Atlas

Geometric match to IL_4V88_414

Geometric discrepancy: 0.2223

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7RR5|1|C2|G|557
7RR5|1|C2|U|558
7RR5|1|C2|C|559
*
7RR5|1|C2|G|586
7RR5|1|C2|C|587

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SD

RPS3 isoform 1

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30