IL_7RR5_179

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7RR5|1|C2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_179 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1688

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7RR5|1|C2|G|867
7RR5|1|C2|G|868
7RR5|1|C2|A|869
7RR5|1|C2|C|870
*
7RR5|1|C2|G|957
7RR5|1|C2|U|958
7RR5|1|C2|U|959
7RR5|1|C2|U|960
7RR5|1|C2|U|961

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27-A