IL_7RR5_195

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_195 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.1915

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7RR5|1|C2|G|1178
7RR5|1|C2|G|1179
*
7RR5|1|C2|C|1459
7RR5|1|C2|A|1460
7RR5|1|C2|C|1461

Current chains

Chain C2

18S rRNA

Nearby chains

Chain P

Transfer RNA; tRNA

Chain SP

RPS15 isoform 1

Chain SS

40S ribosomal protein S18-B

Chain SZ

RPS25A isoform 1