IL_7RR5_196

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_196 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1107

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7RR5|1|C2|G|1213
7RR5|1|C2|U|1214
7RR5|1|C2|C|1215
*
7RR5|1|C2|G|1448
7RR5|1|C2|U|1449
7RR5|1|C2|U|1450

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10-A

Chain SP

RPS15 isoform 1

Chain Sd

RPS29A isoform 1

Chain Sf

Ubiquitin-40S ribosomal protein S31