IL_7RR5_212

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_212 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1235

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7RR5|1|C2|G|1540
7RR5|1|C2|G|1541
7RR5|1|C2|G|1542
7RR5|1|C2|A|1543
7RR5|1|C2|U|1544
7RR5|1|C2|A|1545
*
7RR5|1|C2|U|1566
7RR5|1|C2|U|1567
7RR5|1|C2|C|1568
7RR5|1|C2|A|1569
7RR5|1|C2|A|1570
7RR5|1|C2|C|1571

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18-B

Chain ST

40S ribosomal protein S19-A

Chain SZ

RPS25A isoform 1