3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_215 not in the Motif Atlas
Geometric match to IL_4E59_001
Geometric discrepancy: 0.1582
The information below is about IL_4E59_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7RR5|1|C2|G|1642
7RR5|1|C2|U|1643
7RR5|1|C2|C|1644
*
7RR5|1|C2|G|1757
7RR5|1|C2|U|1758
7RR5|1|C2|C|1759

Current chains

Chain C2
18S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41-A
Chain m
mRNA

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