IL_7RR5_241

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_241 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1212

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|G|1898
7RR5|1|C1|G|1899
7RR5|1|C1|A|1900
7RR5|1|C1|A|1901
7RR5|1|C1|G|1902
7RR5|1|C1|U|1903
7RR5|1|C1|C|1904
7RR5|1|C1|G|1905
7RR5|1|C1|G|1906
*
7RR5|1|C1|C|2333
7RR5|1|C1|U|2334
7RR5|1|C1|G|2335
7RR5|1|C1|U|2336
7RR5|1|C1|C|2337

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LV

60S ribosomal protein L23-B