IL_7RR5_246

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGG*UCAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_246 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3776

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

7RR5|1|C2|A|865
7RR5|1|C2|G|866
7RR5|1|C2|G|867
*
7RR5|1|C2|U|961
7RR5|1|C2|C|962
7RR5|1|C2|A|963
7RR5|1|C2|U|964
7RR5|1|C2|U|965

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

RPS22A isoform 1

Chain Sb

40S ribosomal protein S27-A