IL_7RR5_248

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_248 not in the Motif Atlas

Geometric match to IL_8D29_001

Geometric discrepancy: 0.1509

The information below is about IL_8D29_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7RR5|1|C2|G|871
7RR5|1|C2|G|872
7RR5|1|C2|U|873
*
7RR5|1|C2|G|954
7RR5|1|C2|A|955
7RR5|1|C2|C|956

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

RPS1A isoform 1

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27-A