IL_7RYF_044

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

7RYF|1|A|G|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_044 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1737

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7RYF|1|A|C|1314
7RYF|1|A|C|1315
7RYF|1|A|A|1316
7RYF|1|A|A|1317
7RYF|1|A|C|1318
*
7RYF|1|A|G|1326
7RYF|1|A|G|1327
7RYF|1|A|G|1328

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L22