IL_7RYG_002

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

7RYG|1|A|A|442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_002 not in the Motif Atlas

Homologous match to IL_5J7L_246

Geometric discrepancy: 0.0837

The information below is about IL_5J7L_246

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7RYG|1|A|G|43
7RYG|1|A|C|44
*
7RYG|1|A|G|441
7RYG|1|A|A|442
7RYG|1|A|C|443

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain P

50S ribosomal protein L20