IL_7RYG_043

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUGAGUAA*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_043 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0978

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7RYG|1|A|G|1257
7RYG|1|A|U|1258
7RYG|1|A|G|1259
7RYG|1|A|A|1260
7RYG|1|A|G|1261
7RYG|1|A|U|1262
7RYG|1|A|A|1263
7RYG|1|A|A|1264
*
7RYG|1|A|U|2007
7RYG|1|A|G|2008
7RYG|1|A|A|2009
7RYG|1|A|A|2010
7RYG|1|A|A|2011
7RYG|1|A|U|2012
7RYG|1|A|C|2013

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32