IL_7RYG_053

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUGUAG*UGAGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_053 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.3833

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7RYG|1|A|A|1468
7RYG|1|A|U|1469
7RYG|1|A|G|1470
7RYG|1|A|U|1471
7RYG|1|A|A|1472
7RYG|1|A|G|1473
*
7RYG|1|A|U|1509
7RYG|1|A|G|1510
7RYG|1|A|A|1511
7RYG|1|A|G|1512
7RYG|1|A|A|1513
7RYG|1|A|U|1514

Current chains

Chain A

23S ribosomal RNA

Nearby chains