IL_7RYG_063

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7RYG|1|A|A|1797, 7RYG|1|A|C|1812, 7RYG|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_063 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0951

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7RYG|1|A|U|1794
7RYG|1|A|G|1795
7RYG|1|A|C|1796
7RYG|1|A|A|1797
7RYG|1|A|A|1798
7RYG|1|A|A|1799
7RYG|1|A|C|1800
*
7RYG|1|A|G|1809
7RYG|1|A|G|1810
7RYG|1|A|A|1811
7RYG|1|A|C|1812
7RYG|1|A|G|1813
7RYG|1|A|U|1814
7RYG|1|A|A|1815
7RYG|1|A|U|1816
7RYG|1|A|A|1817

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA