IL_7RYG_093

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCUAGUAC*GGACCAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_093 not in the Motif Atlas

Geometric match to IL_5J7L_289

Geometric discrepancy: 0.3374

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7RYG|1|A|C|2647
7RYG|1|A|C|2648
7RYG|1|A|U|2649
7RYG|1|A|A|2650
7RYG|1|A|G|2651
7RYG|1|A|U|2652
7RYG|1|A|A|2653
7RYG|1|A|C|2654
*
7RYG|1|A|G|2659
7RYG|1|A|G|2660
7RYG|1|A|A|2661
7RYG|1|A|C|2662
7RYG|1|A|C|2663
7RYG|1|A|A|2664
7RYG|1|A|G|2665

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L14