IL_7RYG_102

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGGAAG*UGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_102 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.2099

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7RYG|1|A|U|2843
7RYG|1|A|G|2844
7RYG|1|A|G|2845
7RYG|1|A|A|2846
7RYG|1|A|A|2847
7RYG|1|A|G|2848
*
7RYG|1|A|U|2861
7RYG|1|A|G|2862
7RYG|1|A|A|2863
7RYG|1|A|A|2864
7RYG|1|A|G|2865

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19