IL_7RYG_125

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

7RYG|1|a|A|408

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_125 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2393

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7RYG|1|a|U|405
7RYG|1|a|G|406
7RYG|1|a|A|407
7RYG|1|a|A|408
7RYG|1|a|G|409
7RYG|1|a|A|410
7RYG|1|a|A|411
7RYG|1|a|G|412
*
7RYG|1|a|U|423
7RYG|1|a|G|424
7RYG|1|a|U|425
7RYG|1|a|A|426
7RYG|1|a|A|427
7RYG|1|a|A|428
7RYG|1|a|G|429

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4