IL_7RYG_173

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUAG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_173 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.236

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7RYG|1|a|C|1436
7RYG|1|a|U|1437
7RYG|1|a|A|1438
7RYG|1|a|G|1439
*
7RYG|1|a|C|1457
7RYG|1|a|G|1458
7RYG|1|a|G|1459

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L19

Chain t

30S ribosomal protein S20