IL_7RYG_180

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYG_180 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0831

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7RYG|1|A|G|1664
7RYG|1|A|G|1665
7RYG|1|A|A|1666
7RYG|1|A|A|1667
7RYG|1|A|C|1668
7RYG|1|A|U|1669
7RYG|1|A|A|1670
7RYG|1|A|G|1671
7RYG|1|A|G|1672
*
7RYG|1|A|C|1986
7RYG|1|A|U|1987
7RYG|1|A|G|1988
7RYG|1|A|U|1989
7RYG|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L14