IL_7RYH_122

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

7RYH|1|a|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYH_122 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2288

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7RYH|1|a|U|405
7RYH|1|a|G|406
7RYH|1|a|A|407
7RYH|1|a|A|408
7RYH|1|a|G|409
7RYH|1|a|A|410
7RYH|1|a|A|411
7RYH|1|a|G|412
*
7RYH|1|a|U|423
7RYH|1|a|G|424
7RYH|1|a|U|425
7RYH|1|a|A|426
7RYH|1|a|A|427
7RYH|1|a|A|428
7RYH|1|a|G|429

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4