IL_7S1G_020

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1G_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0823

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7S1G|1|C|U|409
7S1G|1|C|G|410
7S1G|1|C|A|411
7S1G|1|C|A|412
7S1G|1|C|G|413
7S1G|1|C|A|414
7S1G|1|C|A|415
7S1G|1|C|G|416
*
7S1G|1|C|U|427
7S1G|1|C|G|428
7S1G|1|C|U|429
7S1G|1|C|A|430
7S1G|1|C|A|431
7S1G|1|C|A|432
7S1G|1|C|G|433

Current chains

Chain C

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S4