IL_7S1I_075

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1I_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2212

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7S1I|1|I|C|274
7S1I|1|I|C|275
7S1I|1|I|U|276
7S1I|1|I|G|277
7S1I|1|I|A|278
7S1I|1|I|A|279
7S1I|1|I|U|280
7S1I|1|I|C|281
*
7S1I|1|I|G|359
7S1I|1|I|U|360
7S1I|1|I|G|361
7S1I|1|I|A|362
7S1I|1|I|G|363

Current chains

Chain I

23S rRNA

Nearby chains