IL_7S1J_038

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_038 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0547

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7S1J|1|C|C|779
7S1J|1|C|A|780
7S1J|1|C|A|781
7S1J|1|C|A|782
7S1J|1|C|C|783
*
7S1J|1|C|G|799
7S1J|1|C|G|800
7S1J|1|C|U|801
7S1J|1|C|A|802
7S1J|1|C|G|803

Current chains

Chain C

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S21

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11