IL_7S1J_056

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_056 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2184

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7S1J|1|C|C|1259
7S1J|1|C|G|1260
7S1J|1|C|A|1261
7S1J|1|C|C|1262
7S1J|1|C|C|1263
*
7S1J|1|C|G|1272
7S1J|1|C|C|1273
7S1J|1|C|A|1274
7S1J|1|C|A|1275
7S1J|1|C|G|1276

Current chains

Chain C

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S19

Chain v

30S ribosomal protein S14