IL_7S1J_061

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

7S1J|1|C|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_061 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.3845

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7S1J|1|C|C|1407
7S1J|1|C|A|1408
7S1J|1|C|C|1409
*
7S1J|1|C|G|1491
7S1J|1|C|A|1492
7S1J|1|C|A|1493
7S1J|1|C|G|1494

Current chains

Chain C

16S rRNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain t

30S ribosomal protein S12