3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1J_072 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0605
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7S1J|1|I|G|188
7S1J|1|I|G|189
7S1J|1|I|A|190
7S1J|1|I|A|191
7S1J|1|I|C|192
7S1J|1|I|U|193
7S1J|1|I|G|194
*
7S1J|1|I|C|201
7S1J|1|I|U|202
7S1J|1|I|A|203
7S1J|1|I|A|204
7S1J|1|I|G|205
7S1J|1|I|U|206
7S1J|1|I|A|207
7S1J|1|I|C|208

Current chains

Chain I
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L15
Chain f
50S ribosomal protein L28
Chain l
50S ribosomal protein L35

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