IL_7S1J_075

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2284

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7S1J|1|I|C|274
7S1J|1|I|C|275
7S1J|1|I|U|276
7S1J|1|I|G|277
7S1J|1|I|A|278
7S1J|1|I|A|279
7S1J|1|I|U|280
7S1J|1|I|C|281
*
7S1J|1|I|G|359
7S1J|1|I|U|360
7S1J|1|I|G|361
7S1J|1|I|A|362
7S1J|1|I|G|363

Current chains

Chain I

23S rRNA

Nearby chains