IL_7S1J_085

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_085 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0861

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7S1J|1|I|U|703
7S1J|1|I|G|704
7S1J|1|I|A|705
7S1J|1|I|A|706
7S1J|1|I|G|707
*
7S1J|1|I|U|724
7S1J|1|I|G|725
7S1J|1|I|G|726
7S1J|1|I|A|727
7S1J|1|I|G|728

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2