IL_7S1J_095

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_095 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.197

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7S1J|1|I|G|875
7S1J|1|I|C|876
7S1J|1|I|A|877
7S1J|1|I|A|878
7S1J|1|I|G|879
*
7S1J|1|I|C|898
7S1J|1|I|A|899
7S1J|1|I|A|900
7S1J|1|I|C|901
7S1J|1|I|C|902

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16