IL_7S1J_107

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7S1J|1|I|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_107 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.3563

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7S1J|1|I|G|1087
7S1J|1|I|A|1088
7S1J|1|I|A|1089
7S1J|1|I|A|1090
7S1J|1|I|G|1091
*
7S1J|1|I|C|1100
7S1J|1|I|U|1101
7S1J|1|I|C|1102

Current chains

Chain I

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L36