IL_7S1J_130

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7S1J|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_130 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7S1J|1|I|C|1686
7S1J|1|I|G|1687
7S1J|1|I|U|1688
7S1J|1|I|A|1689
7S1J|1|I|A|1690
7S1J|1|I|C|1691
*
7S1J|1|I|G|1696
7S1J|1|I|G|1697
7S1J|1|I|A|1698
7S1J|1|I|G|1699
7S1J|1|I|A|1700
7S1J|1|I|A|1701
7S1J|1|I|G|1702

Current chains

Chain I

23S rRNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2