IL_7S1J_152

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7S1J|1|I|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_152 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3335

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7S1J|1|I|C|2129
7S1J|1|I|U|2130
7S1J|1|I|U|2131
7S1J|1|I|U|2132
7S1J|1|I|G|2133
7S1J|1|I|A|2134
7S1J|1|I|A|2135
7S1J|1|I|G|2136
*
7S1J|1|I|U|2155
7S1J|1|I|G|2156
7S1J|1|I|G|2157
7S1J|1|I|A|2158
7S1J|1|I|G|2159

Current chains

Chain I

23S rRNA

Nearby chains