3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7S1K|1|I|A|504, 7S1K|1|I|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1K_077 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0896
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7S1K|1|I|G|481
7S1K|1|I|A|482
7S1K|1|I|A|483
7S1K|1|I|C|484
*
7S1K|1|I|G|496
7S1K|1|I|A|497
7S1K|1|I|G|498
7S1K|1|I|U|499
7S1K|1|I|G|500
7S1K|1|I|A|501
7S1K|1|I|A|502
7S1K|1|I|A|503
7S1K|1|I|A|504
7S1K|1|I|A|505
7S1K|1|I|G|506
7S1K|1|I|A|507
7S1K|1|I|A|508
7S1K|1|I|C|509

Current chains

Chain I
23S rRNA

Nearby chains

Chain a
50S ribosomal protein L22
Chain c
50S ribosomal protein L24

Coloring options:


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