IL_7S1K_101

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7S1K|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_101 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0713

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7S1K|1|I|U|1018
7S1K|1|I|U|1019
7S1K|1|I|A|1020
7S1K|1|I|A|1021
7S1K|1|I|G|1022
7S1K|1|I|U|1023
7S1K|1|I|G|1024
*
7S1K|1|I|C|1140
7S1K|1|I|U|1141
7S1K|1|I|A|1142
7S1K|1|I|A|1143
7S1K|1|I|A|1144

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36