3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GC*GAU
Length
5 nucleotides
Bulged bases
7S1K|1|I|A|1981
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1K_134 not in the Motif Atlas
Homologous match to IL_7A0S_064
Geometric discrepancy: 0.0997
The information below is about IL_7A0S_064
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
134

Unit IDs

7S1K|1|I|G|1770
7S1K|1|I|C|1771
*
7S1K|1|I|G|1980
7S1K|1|I|A|1981
7S1K|1|I|U|1982

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0854 s