IL_7S1K_146

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

7S1K|1|I|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1K_146 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.0761

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7S1K|1|I|A|2070
7S1K|1|I|A|2071
*
7S1K|1|I|U|2438
7S1K|1|I|A|2439
7S1K|1|I|C|2440
7S1K|1|I|U|2441

Current chains

Chain I

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain K

50S ribosomal protein L2

Chain s

nascent peptide chain