IL_7S9U_030

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7S9U|1|A|C|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_030 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.2112

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7S9U|1|A|C|1040
7S9U|1|A|C|1041
7S9U|1|A|A|1042
*
7S9U|1|A|U|1205
7S9U|1|A|G|1206

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Z

50S ribosomal protein L30