IL_7S9U_035

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAAG*CGAAAAUGUACCGGGGC

Length

24 nucleotides

Bulged bases

7S9U|1|A|A|1173, 7S9U|1|A|U|1176, 7S9U|1|A|A|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_035 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.3163

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|G|1070
7S9U|1|A|G|1071
7S9U|1|A|A|1072
7S9U|1|A|A|1073
7S9U|1|A|A|1074
7S9U|1|A|A|1075
7S9U|1|A|G|1076
*
7S9U|1|A|C|1170
7S9U|1|A|G|1171
7S9U|1|A|A|1172
7S9U|1|A|A|1173
7S9U|1|A|A|1174
7S9U|1|A|A|1175
7S9U|1|A|U|1176
7S9U|1|A|G|1177
7S9U|1|A|U|1178
7S9U|1|A|A|1179
7S9U|1|A|C|1180
7S9U|1|A|C|1181
7S9U|1|A|G|1182
7S9U|1|A|G|1183
7S9U|1|A|G|1184
7S9U|1|A|G|1185
7S9U|1|A|C|1186

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain J

50S ribosomal protein L13