IL_7S9U_063

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7S9U|1|A|G|1830, 7S9U|1|A|A|1845, 7S9U|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_063 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1063

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7S9U|1|A|U|1827
7S9U|1|A|G|1828
7S9U|1|A|C|1829
7S9U|1|A|G|1830
7S9U|1|A|A|1831
7S9U|1|A|A|1832
7S9U|1|A|G|1833
*
7S9U|1|A|C|1842
7S9U|1|A|G|1843
7S9U|1|A|A|1844
7S9U|1|A|A|1845
7S9U|1|A|G|1846
7S9U|1|A|U|1847
7S9U|1|A|A|1848
7S9U|1|A|U|1849
7S9U|1|A|A|1850

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2